LIZARDO ET AL. 2017

The mapped RNAseq files can be reached from the GEO database here. If it is needed urgently, please contact gokcumen@gmail.com as this data is currently marked as “private” and is scheduled to be released on Mar 31, 2017.

You can reach the codes and input files here.


PAJIC ET AL. 2016

You can reach the codes and input files here.


XU ET AL. (Under Review)

You can reach the data and codes here.

VCFtoTree can be accessed here.


EAASWARKHANTH ET AL. 2016

You can reach the data here and R codes here.

VCFtoTree can be accessed here.


XU ET AL. 2016

You can reach the data here, and R codes here.

VCFtoTree can be accessed here.


EAASWARKHANTH ET AL. 2015

Tabulated 1000 Genomes deletion calls and their allele frequencies (input file for the R analysis, also can be opened by excel).

.bed file for the 1000 Genome deletions (input file for Galaxy)

perl code for converting .vcf files to .fasta files (Courtesy of Pavlos Pavlidis)

Frequencies of KAP gene (input file for the R analysis – graph)

R code for subsetting and graphs


LIN ET AL. 2015

You can reach the codes here

 

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